MCP Atlassian works with any MCP-compatible client. This page documents platform-specific notes and known issues.
Compatibility Matrix
| Platform | Status | Transport | Notes |
|---|
| Claude Desktop | Fully supported | stdio | Primary development target |
| Cursor | Fully supported | stdio | |
| Windsurf | Fully supported | stdio | |
| VS Code (Copilot) | Supported | stdio | See Copilot setup |
| Vertex AI / Google ADK | Supported | stdio / HTTP | Schema sanitization applied automatically |
| Amazon Bedrock | Compatible | stdio / HTTP | Not explicitly tested |
| LiteLLM | Compatible | stdio / HTTP | Passes schemas to underlying provider |
| OpenAI Gateway | Compatible | stdio / HTTP | |
| ChatGPT | Not tested | HTTP | See ChatGPT notes |
Schema Compatibility
MCP Atlassian includes automatic schema sanitization to ensure compatibility with strict AI platforms:
anyOf flattening: Pydantic v2 generates anyOf patterns for optional parameters (T | None). These are automatically collapsed to simple {"type": T} before schemas are sent to clients, since Vertex AI and Google ADK reject anyOf alongside default or description fields.
- No zero-argument tools: All tools have at least one parameter, which is required by some OpenAI-compatible gateways.
- All properties have explicit
type: Required by Vertex AI.
- No
$defs / $ref: All schemas are fully inlined.
These constraints are enforced by CI tests across all tools.
GitHub Copilot
GitHub Copilot’s coding agent supports MCP servers via stdio transport. Key configuration notes:
Use stdio transport
Copilot’s agent mode uses stdio, not HTTP. Configure as a standard MCP server:{
"mcpServers": {
"mcp-atlassian": {
"command": "uvx",
"args": ["mcp-atlassian"],
"env": {
"JIRA_URL": "https://your-instance.atlassian.net",
"JIRA_USERNAME": "your-email@example.com",
"JIRA_API_TOKEN": "your-api-token"
}
}
}
}
Verify tool discovery
If Copilot reports “Retrieved 0 tools”, ensure you are using mcp-atlassian >= 0.16.0 (which includes FastMCP updates for better protocol compliance).
Docker alternative
When using Docker, expose via stdio (not HTTP):{
"mcpServers": {
"mcp-atlassian": {
"command": "docker",
"args": [
"run", "-i", "--rm",
"-e", "JIRA_URL=https://your-instance.atlassian.net",
"-e", "JIRA_USERNAME=your-email@example.com",
"-e", "JIRA_API_TOKEN=your-api-token",
"ghcr.io/sooperset/mcp-atlassian:latest"
]
}
}
}
Vertex AI / Google ADK
Vertex AI enforces strict JSON Schema validation. The automatic anyOf flattening resolves the INVALID_ARGUMENT errors previously reported with Google ADK.
If you encounter schema errors, ensure you are running the latest version:
ChatGPT
ChatGPT’s MCP integration has reported vague “violates guidelines” errors. This may be related to schema validation but no specific diagnostics are available. If you encounter this, please open an issue with the exact error message.
HTTP Transport
For platforms that require HTTP transport (e.g., remote deployments, gateways), see the HTTP Transport guide.
Cloud vs Server/Data Center
MCP Atlassian supports both Atlassian Cloud and Server/Data Center deployments, but some features differ between platforms.
Authentication Methods
| Method | Cloud | Server/DC |
|---|
| API Token (username + token) | Yes | Yes (username + password) |
| Personal Access Token (PAT) | No | Yes |
| OAuth 2.0 | Yes (3LO) | Yes (Application Links) |
| BYOT (Bring Your Own Token) | Yes | Yes |
| Tool | Cloud | Server/DC | Notes |
|---|
jira_batch_get_changelogs | Yes | No | Cloud-only changelog API |
jira_get_issue_proforma_forms | Yes | No | Cloud-only (requires cloud_id for Forms API) |
jira_get_service_desk_queues | Yes | Yes | Requires Jira Service Management |
confluence_get_page_views | Yes | No | Cloud-only analytics API |
confluence_search_user | Yes (CQL) | Yes (group member fallback) | Server/DC uses group member API; specify group_name |
Content Format Differences
| Feature | Cloud | Server/DC |
|---|
| Issue descriptions | ADF (Atlassian Document Format) | Wiki markup |
| Confluence pages | Storage format (XHTML) | Storage format (XHTML) |
| Markdown input | Auto-converted to ADF | Auto-converted to wiki markup |
| Rich text rendering | ADF JSON | Wiki markup |
MCP Atlassian handles format conversion automatically — you always write in Markdown regardless of platform. The tools convert to the appropriate format (ADF for Cloud, wiki markup for Server/DC).
API Differences
| Aspect | Cloud | Server/DC |
|---|
| Base URL | *.atlassian.net | Custom domain |
| API version | REST API v2 + v3 | REST API v2 |
| User identifiers | accountId | username or userKey |
| Rate limiting | Enforced (~100 req/min) | Instance-dependent |
| Webhooks | Cloud-managed | Self-managed |
When switching between Cloud and Server/DC, custom field IDs will be different. Use jira_search_fields to discover the correct field IDs for your instance.