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MCP Atlassian can be installed using several methods. Choose the one that best fits your workflow. The simplest way to run MCP Atlassian without permanent installation using uvx: 
# Run directly (downloads on first use, cached for subsequent runs)
uvx mcp-atlassian --help

# Run with a specific Python version if needed
uvx --python=3.12 mcp-atlassian --help

​
IDE Configuration with uvx

Edit your config file:
  • macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
  • Windows: %APPDATA%\Claude\claude_desktop_config.json
  • Linux: ~/.config/Claude/claude_desktop_config.json
{
  "mcpServers": {
    "mcp-atlassian": {
      "command": "uvx",
      "args": ["mcp-atlassian"],
      "env": {
        "CONFLUENCE_URL": "https://your-company.atlassian.net/wiki",
        "CONFLUENCE_USERNAME": "your.email@company.com",
        "CONFLUENCE_API_TOKEN": "your_confluence_api_token",
        "JIRA_URL": "https://your-company.atlassian.net",
        "JIRA_USERNAME": "your.email@company.com",
        "JIRA_API_TOKEN": "your_jira_api_token"
      }
    }
  }
}

​
Docker

Docker provides an isolated environment and is recommended for production deployments or when you need specific version control. 
# Pull the latest image
docker pull ghcr.io/sooperset/mcp-atlassian:latest

# Run with environment variables
docker run --rm -i \
  -e JIRA_URL=https://your-company.atlassian.net \
  -e JIRA_USERNAME=your.email@company.com \
  -e JIRA_API_TOKEN=your_api_token \
  ghcr.io/sooperset/mcp-atlassian:latest

​
IDE Configuration with Docker

{
  "mcpServers": {
    "mcp-atlassian": {
      "command": "docker",
      "args": [
        "run", "-i", "--rm",
        "-e", "CONFLUENCE_URL",
        "-e", "CONFLUENCE_USERNAME",
        "-e", "CONFLUENCE_API_TOKEN",
        "-e", "JIRA_URL",
        "-e", "JIRA_USERNAME",
        "-e", "JIRA_API_TOKEN",
        "ghcr.io/sooperset/mcp-atlassian:latest"
      ],
      "env": {
        "CONFLUENCE_URL": "https://your-company.atlassian.net/wiki",
        "CONFLUENCE_USERNAME": "your.email@company.com",
        "CONFLUENCE_API_TOKEN": "your_confluence_api_token",
        "JIRA_URL": "https://your-company.atlassian.net",
        "JIRA_USERNAME": "your.email@company.com",
        "JIRA_API_TOKEN": "your_jira_api_token"
      }
    }
  }
}
See Configuration for more Docker options including environment files.

​
pip

Install directly with pip for development or when you need the package in your Python environment: 
pip install mcp-atlassian

# Run the server
mcp-atlassian --help

​
uv

If you’re using uv for package management: 
# Add to your project
uv add mcp-atlassian

# Run
uv run mcp-atlassian --help

​
From Source

For development or contributing: 
git clone https://github.com/sooperset/mcp-atlassian.git
cd mcp-atlassian
uv sync --frozen --all-extras --dev
uv run mcp-atlassian --help
See CONTRIBUTING.md for development setup details.